NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1003129

Scaffold Ga0272434_1003129


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1003129 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27676
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.13%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013598Metagenome269Y
F037509Metagenome167Y
F059497Metagenome133Y
F083460Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100312911F059497GAGMFIEDINRKIIYNAQCKLNVINIFSVNEMTQNLENIQVKLSSKYQDFLNVFDQVQADKLLFHHSYDHKIKLTSDTTSLQCXAY
Ga0272434_100312916F013598N/AMNFITDLSDSYDYNAILTVICKLLKERYYIFCIIDDEDITVEKTAEMLLQXVY
Ga0272434_10031295F037509N/AMILISIFIQIHSTDNEMSIKKFVNLMIDDIKKQNNIKKLIESTKIYDHVIAXKSITQSVALVQID
Ga0272434_10031297F083460N/AMQLRMKSLDNQAYSDALFEXNASSIKYAMKRXLHKLLNHHLNHEESQDNSENDDKNEAAEAV
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