NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1003144

Scaffold Ga0272434_1003144


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1003144 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27612
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (30.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F037509Metagenome167Y
F074202Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100314410F002432GAGMIEFSENFNIFSIISMISFYFNKRFYFRMSFNSDTTDYKTTYECLEARKADDIIIRMKELLIFDYQQLKKTKQITEAQINKHKXDIIYEVDNXVXLFSRNMKTMRSCKDLKDKQLKLYQIIANVEIFYCLHLSESMKXLHSMFSSKLLRLYSNNSLSK
Ga0272434_10031442F002432N/AMQNDXVKXISMMKFSNNFNIFSIISMISFYFNKDFHSXISFNSDTTDYKITHERLKARKADDIIIXMKELLSFDHQQLKKTKLIIKAQINKHKXDVIYEIDDXVXLFFRNIKITRSCKDLKDKQLKSYQITVKARIFYHLHLSVSMKHLHLMFSSKLLRLYSENLLSEQHAESLKLIIIDDDDDEHXKINDILNFRRY
Ga0272434_10031444F074202GAGMLSHIXVKSESDLDQILTKSLTSFNQFXHIRNSFLCLNNAFNLALLLNDDFFLKLIILKLRLRVTVELDFKEEVILHCSFFNAKDDNLDSSFNLKTATNFIKFLXFIIFYNDXSFFFNLFLSIKCDVTXSKXADVENQAFKSEVVVDLAVLNNVDNENSSKFENLNCKDDMRRSTLIVSSFFSSDIIN
Ga0272434_10031445F037509N/AMILISIFIQINLIDNEMSIKKFVYLMINDIERQNNIKKSIESMRIYDHMIARESIAQSVASVQIN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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