Scaffold Ga0272434_1003180

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272434_1003180

Scaffold Ga0272434_1003180

Overview

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1003180 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	27401
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (36.11%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae → Alectoria → Alectoria fallacina	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100318030	F004755	GAG	LSYVHSRLFNDAAEITQARCERDYVNLYRIVDNLLKELAQLFNDSNKKVNFHKEYYNLIQEFKKFNEFYTQFQHLSFYLNYHEKQLIIDLKDKIHSRFXFIXVDQLVQSDSLKEIRFYLIHLNNDQRVIXEIKNKVKRVNDFSKTIFHKATVIIQSVDHLKSDQLKSRDAILTNVKEADILVESCFICHKSDHSFKECFNQLTRINAVNNEYDRFDFDSNFDSKN

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