NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1003268

Scaffold Ga0272434_1003268


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1003268 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26701
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004755Metagenome424Y
F011463Metagenome290Y
F087978Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100326813F011463N/AMKKLLNFDHQQLKKTKLAIKVQINKHKXNVTYKVNDXVXLSFRNVKITRLCKDLKDKQLNFYQITAKVSIFYHFHLSVSLKHLHLMFSLKLLQSYSENSLSEQHSKSLRSITIKDDEYXKINDILNFRRYXDXI
Ga0272434_100326818F087978N/AMSIFYHLHLSVSIKHLHSMFSLKLLXSYSEDFLSEQHSESLRLITIEDDEHXEINNILNFRRYQDXIQYKVKXKDLDRNNKXYYVDKEEFNDSEKVLNEFHKLYSSKSR
Ga0272434_100326824F004755GAGLSYVHSRLFDDAAKITQARRERDCVNFYRIIKDLLKELAQLFNDSNKKVNFRKEYYNLVQESKKFSKFYTQFQQLSFYLDYHEKQLIIDLKDKINSRLRFIXVDQLVQSDSLKEIHFYLIHLNNDQXVIREIKNKLKRVNDVSKTIFHKVIIIIQSVDHLKFDNLKSRSAILTNVKKADILVKSCFICHKSDHSFKKCFNQSTRINAVNKEYNHFDFDLNFDSKN
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