NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272434_1003286

Scaffold Ga0272434_1003286


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1003286 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26555
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (35.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F008668Metagenome329Y
F033266Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100328610F008668N/AMTSFYFNKSFHLXMSFDSNTTDYKTTCERLEARKANNIVIQMKELLIFNHQQLKKTKQIIEAQINKHRQDVIYEVND
Ga0272434_100328614F033266N/AMFSHSFTEERFEEFQNRFSQISDADSSKSSSAASFIHEDDESFAETIILLMFYEIXKAXSLVFDKETDRLYELNKQQEDEIKELKTRLQTKENTSSDFICSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQNKL
Ga0272434_10032868F000597GAGVTFIKDMMKDVLISLTKSSSDDLFALKSLTTECVLSSNEISYSLKSLFDIEAADYSFIDEMIAQIVYNQLQIKSLTLIKAKSIQEFNNHYAKKLITHVIYLNLTVQDHMIDTASMLITQLNQH
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.