NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272434_1003463

Scaffold Ga0272434_1003463


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1003463 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25383
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018839Metagenome232Y
F046102Metagenome151Y
F057012Metagenome136Y
F065269Metagenome127Y
F104136Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10034632F104136N/AMICSIRSVQIFNEQRSMNKSLIXMNLLTSACKLMFNXRNXMLDQLLRHXXFKSLTLLLASQXXSXLXSQSHSLHERNSEDXMLTLLKRNCLKKNFALNARSQNIKHVTVLNQLRYMKLQRIQKTICFHQSSDXEQHAHILLH
Ga0272434_100346322F018839N/AVKVVTFNHLTSDLYAAVSIIAMFIKSKDEAKLTELNDFMILLNEDDFSLSQVMTEEIDLFSI
Ga0272434_100346323F046102N/AMSSSNDFFALKSLTTECVLSSNEISYSLKSLINTEAANYLFINELTAQNVCDYLQIESLSLIKLKSIREFNDHYAKKLITYAIYSNLTVQDHMKXFVFMLITQLDQHQMIFEKTXMNKIKVTIDMKDNRLQFSSFEAHIKASIKAHSTVLSSKKIAIEQKSSIST
Ga0272434_10034637F057012N/AMIESDMLIFCFINMLNDSFDFKSFIVNIILSSLKRIFXSLVLINIKVTDMMFINDSLISELCEHFDIQSISLFKSKSIHLYDKILDRKFITHALYILITIQEHKNEMMLLLITHLNQHKIIIDNLXLKRNQILINSANDXLISSSNIXTQKLIVSKASSQSAFHXLESSEICEMKQKNLKSISMIILKQTTNSKSVN
Ga0272434_10034639F065269N/AMIRSTESESVSIAHYELXNARKESLLSHNXVASEEENMNAMLNIEEENINTLFFDYKMIKISINKELNA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.