NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1003529

Scaffold Ga0272434_1003529


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1003529 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24926
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (13.51%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028978Metagenome189Y
F037508Metagenome167Y
F081945Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10035293F028978N/AMKIADLKKNIEKSIYKQILETNEIDENCTLLRKVVLKDEAQYEDTKLRNCRVQNEILYRSNLL
Ga0272434_10035296F037508N/AVNHYSIEKLRIIYVTFRLNDDADEQIYAKHHINAFSFYLSLTKLLKHLNEIYDDQNRNXKCRCKYNALKQSNKSFNFFYFKFTKIFSFLDYDDXTLMNNLQNKINNHLQNALSVCLIEFSSLDKLKTFLQRVNNKQXVNYQLRDE
Ga0272434_10035298F081945N/AMFSHSFTEEHSEEFXNHFSQISDVDSLKSLSAASFIHEDDKSFVEMIMFLMFYKIXKAXSLVLDKETD
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