NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1003588

Scaffold Ga0272434_1003588


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1003588 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24506
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028367Metagenome191Y
F048017Metagenome148Y
F057011Metagenome136Y
F080688Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100358810F080688N/AMLQTLITXAEMHXTTHSDVHXSSDFEDLHEKQTVESITSQLSEHFIEVQLSDHL
Ga0272434_100358811F048017AGGMNTKVNALIRMLLANVSESTQRLENHFQTVLILDRIDILSIELKANLYQXVXMINQTDEFCSKYKQAMNENKLKFHITKLKNCEIIDDVLFRKYLLXVSENMYTKLLQEVHNQSLISHLNNKXIINLVQHFYYXLNHQATIQ
Ga0272434_100358815F057011N/ALCSQIEVLLKENYFEKSFLINASFISQSNSFSLRSLINSDFVVYMLIHDKLVNKVCQKLEIQFISLVKEKLIREYDEKLARKIITHKILFNLIIESHKKLTMLMLIADIKHHEAILSKFXMNKNEILLNIRHDTIVFFNQLNISISIFSISSNTKHSSXSXSTFISSAAHSKIFKMLKHSVLFIQKESFLI
Ga0272434_10035888F028367N/ALLXFQFKFRFKKLVISSKVIKKIEIISLCKLDEILSKENYFEKLFLIDAHLISQNXSFNLCSLIDSDSVVYMIIHSNLVNKVCEKLKIQSILLTKEKLIRDYDEKIFKKIITHKILLDLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNDVIVFSNQLNTSISIFSISFNSKHSSXLQSTLFSLITQTKIFMMLK
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