NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1003619

Scaffold Ga0272434_1003619


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1003619 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24354
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (25.81%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F013598Metagenome269Y
F032102Metagenome180Y
F036036Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100361919F003820N/AMNDLQNKINNRLQNTLSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIIKVTIVSDKCIATSLSAMMTLIIEYVKSTIFSISESVRSSIICYICKISDHLFKNCSQNKINISTFHAFILHLHEIIISKNKENEKMFSFSKNSEAKN
Ga0272434_100361920F000597N/AMKDVLISSTMSMSDDSFASESLTIKCVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIELLTLIKAKSIQEFDNHYAKKLITHVIYSNLTVQDHMIDMTSMLITQLDQHQMILEKT
Ga0272434_100361927F032102N/AMKIADLKKNNDQSIYKQIFETNEIDENCTLLREAIAKDEAQCEDIKLKNCQVQNEILYKDSQL
Ga0272434_100361928F013598N/AMNFIIDLFDSYDYNAILTVICRLSKERHYISCIIDDEDITAEKTAEMLIQ
Ga0272434_100361929F036036N/AMLISLIHHLFSCFDQSFTSEDQSLIHLFRYILDSIDLQAFANAFILDDVRVKAHMRMKVLVHEKESQEND
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