Scaffold Ga0272434

Basic Information
Taxon OID	3300031473 Open in IMG/M
Scaffold ID	Ga0272434_1003850 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031473 Open in IMG/M

Scaffold ID

Ga0272434_1003850 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22954
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (7.41%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

22954

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (7.41%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.5	Long. (^o)	159.59	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.5

Long. (^o)

159.59

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F002432	Metagenome	559	Y
F003820	Metagenome	466	Y
F006206	Metagenome	378	Y
F007840	Metagenome	343	Y
F008115	Metagenome	338	Y
F026450	Metagenome	197	Y
F055317	Metagenome	138	Y
F094626	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100385010	F006206	N/A	VQIISLCNLDEILSKKNYFDKSFLVDALLISQNKSFSLRSLIDSDSAVYTIIHINLVAKVCKELKIQSISLTKEKLIKEYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADINHHEVILEKS
Ga0272434_100385011	F055317	N/A	MKVXKKRIYVLNKETDYLVEIKQRDKSEIQQLKAKLQAFTAITVNVIITAFSIVIYFEQSKYHKIFDSSMFIDEKNFTXKNXSLDIXEKLAMNVDIFSNELYKLSYIHFQLADDVVEVTQVRCNFNCDNFYLTVNELLEKLAQSFHDSDKKDNYRREYINLVQESKKFSDFFNQFQRLYIYLKYQKNVLVINLKNKINSCLXIFXTAQMKSLIKLLDIXNYLIHLNNEHRAVQEIKNKLLKHDDSKIIISRATIAVQSSALKSDXSKSRSAVLTSVKNADVLVKICFICHKLDHSFKECLNQSVKVNAVDENYDHFESDTESEFESKN
Ga0272434_100385014	F007840	N/A	MIDAIERQNNTRRFIESTARLIELLDNLQLIKYTSFILINKINDKESSLIARESNRSRESINSQIKQQKXLYLLLLSIILRLISFF
Ga0272434_100385015	F026450	N/A	MSRLFKEHFEASFFIVEDNDSFAEIITSSMTMKALKKRCKELKARLQARKIISSSSIYSERSRSQKILDSLLFTDEKNSIXENXYEKVQNKLKINVDLFSSEXVKLSYVHFRLFNDAAEITQSRRERDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIIDLKNKINSRLXFAXITQLIQFSTLKEIHFYLIXLNNDQXVIQEIRNREAMIKA
Ga0272434_100385019	F000597	GAG	MMKEMLISSMMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHMIDTVFMLITQLDQHQMILEKIXMNKINLVIDM
Ga0272434_100385020	F003820	N/A	MKLFNYLNYDDCTLMNDLQNKINNRLQNALSVCSENFTSLIRLRIFLQDVNNKQXVNYQLRSQLRTVIVKVSVVSDKCVTTSLSVMTLIIEYVKSTIFSTSESVRSSIICYICKISDHLFKNCSQNKINTSASHVFILRLHEIIISKNKKNEKMSSFKDSEAKN
Ga0272434_100385026	F008115	N/A	MNFITELSLSKNYNVICMIICCLFKERHYVLCHXEDNDISIEETVXIMLXNVYXLHDLLSSIVSNKDSQFILIMXQSLCKRLKIKVNLSTVYHSEINDQLKRANQDVECELXIYCNYMQNDXAKXLSMMKFSDNFNTFSTILMISFYFNKNFHLRMSFDSDTTDYETTRQHIEARKIDNIVTXMSKLLIFNHQQLKKIKQIIEAQMNKHRRDVIYEVNDQVXLVFENIKIIRSCKDLKNKQLDLYSITVKVEIFYHLQLSKSMKHIHSMFSLKYLQSSSNNLLSEQHFEFSRSMIIEENEKHXKVDDILNFKXYKERLQYKVKXIEIDHDDEXYYVDKEKFNDSKKVLNEFYKLYLNKSH
Ga0272434_10038504	F094626	N/A	MFLNEXNIITARLFKKLNDKMLNSFQITDSVDSFYKLKLSETMHIHDVFHSELLRSVVDDSLSD
Ga0272434_10038506	F002432	N/A	MSFDSDTTDYETTCERLEARKTDDIVIQMKKLLSFNHQQLKKTKLIIKVQINKHKXNVTYEVNDXVXLSFRNIKTTRLCKDLKDKQLDSYQITVKVNIFYHLHLSVSMKHLHLIFSSKLLQSYSEDSLSEQHSESLRSITIKDDEYXKIDDILNFRRYQDQIQYKVKXKDLDRNDEXYYVDKEEFNNSEKVLNEFHKLYSSKSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272434_1003850

Overview

Ecosystem & Geography

Associated Families

Sequences