NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272434_1004181

Scaffold Ga0272434_1004181


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1004181 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21252
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (21.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004755Metagenome424Y
F020121Metagenome225Y
F074204Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100418110F020121GAGMLIAQIIYEFNVNLSRCSCFKYFVEDEVXLNVCNLSIARLAVKLNDHNIDFFKIKQVFKNNSLIIELNLSTFMKIHSIFYVILLSHIASDLLSNQHQKFQELIVIKNDERFXYVNSILNFKRDRCYNLSLLKYYIDXEDHFSTXKSFHLLNNCE
Ga0272434_100418115F074204N/AMIVFYILHQAQFKVFTLALINSEVFAYVFMNKFFTQQHHLLLHQLIHFCRLQEFDDQVALIDDIIHVIEITMILNEYIERLFFYVIELNQYFIIMNLS
Ga0272434_10041817F004755N/ALKELAELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINSHLXFIXINQLVQSDSLKEIHFYLIHLNNDQRVIQEIKNKVNLIKCVNDLSKIIFHKAVVTQSVNHSKSDHLKLHDAILTSVKEADVLVETCFICHKSDHSFRECSDXSTRINAVNNEYDRFEFNFDSNFNSKN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.