NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1004327

Scaffold Ga0272434_1004327


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1004327 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20577
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055317Metagenome138Y
F079402Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100432710F079402N/AMKIAYVKSXVSETMIKHIAFRMKNMITNSFLEAEKILSIINKMYDDFNXYHTTQRQFLKLYQNKIFFHEF
Ga0272434_100432714F055317N/AMFIDEKNSTXENXSFDIREKLAINIDIFSNELYKLSYINSRLADDIVEITQVRRDLNCNNLYLTVNELLKKLAQSFHDSDKKDNYRREYINLIQESKKFSDFFNQFQRLYIYLKYQKNILVIDLKNKINSRLXIFXTAQMKSLIKLSDIXNYLIRLNNEHRAVREFKNKLLKCDDSKIIISRATIAVQSLTSKFDXSKSRSAVLTNIKNANVLVEICFVYHKSDHSFRECLNQSIKVNAIDKNYNHFKLDTESEFKSKN
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