NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1004462

Scaffold Ga0272434_1004462


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1004462 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19973
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.88%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F008115Metagenome338Y
F009377Metagenome318Y
F028667Metagenome190Y
F098339Metagenome103Y
F104136Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100446212F098339N/AMQNDXFKXLFMIEFVNNNILSSVIFLILFFMNKSFYSHMSFDSDIIEYESTRERLQINXVKNISEQMNKILIFAREALIKTXKQMMNQANKHRKKINYKIESKMLLNEQNIITARSFKKLNDCCNRALRISLT
Ga0272434_100446213F009377N/AMTRSTELESELVSTTCYETXDAERESLLSQNXTASEEEDTNASLNIEEKNTNALFFNHEMIKISISTKLNAXISAHEADDLVVFIKYMCQQHDIEIEIHNDMIQMLNDINKINVELKVINIELKATQTTLNAVQTRLQKEMKKKNVIIRHLEATSSXLSTSISKDRFSKSIKLSDSSLFEDSKQNVNNXLSXMRNKLKMNKNHFSIEEMKIAYVKSRVSETTIKHIALRMRNMITNSFLEAEEILSIINKMYDDLNRRHTTQRQFLKLY
Ga0272434_100446214F104136N/AMIFSIRLAQIFNESXSMNKLXIXMNSSTSACKLTFDXRNXMLDQSSRHQRFKSLALLLASXRRSLLRLQLQSLHERNSKYRTLILLERSCLKKNSASNAKSQNIKHMTVLSQLRCTKSQRIQKTTCFRQSSDXEXYTHILLHQHVXRLIXFQVVHCXHYLE
Ga0272434_10044622F008115N/AMNFITELFLSEDYNIICTIICHLIKERHYVFCHXKDDDISVEKMIXIMLXNVYXLHDLLSSIVSNRDFQFISTMXKSLCKRLRITASLFTIYHSEIDDQLKXVNQNVERELRIYCNYMQNDXVKXISMMKFSNNFNIFLITSMIFFYFNKEFHFRMSFNSDTTDYETTHERLEARKADDIVIQMKELLSFDHQQLKKMKLIIEVQINKHRXNVTYEVDNXVXLSFRNVKTTRLCKDLKDKQLDLYQITAKIDIFYHLHLSVSMKHLHSIFSSKLLXSYSEDSLSEQHSESLRSITIEDDKHXKIDDILNFRRYRGRIQYKVKXKDLDRDDEXYYVNKEKFDDSEKVLNEFHKLYSSKSR
Ga0272434_10044628F028667N/AMIXNNLLHLFRKFARNSLNYFHQKIHRQIYSNLSNQSLNQIYLIFLTMTCNFKSVESXTAHLLKSIVNKXVFLISFNVSVDIKNIDISXNIKTEEQLRQXVHNQSNEIIKMLNEFKSQRDTTLKLNEQXIVVQVEHDKRLNQLKIKQMIIDTLKEINKCYQEKMLNLKNKLKEVSYSANQSXSHQFTESXVSMKSLSRQSIKNRTXRESFTLFNNDHHKSFKFSNSSVFINEDKSTXNSXRIKINDKLQTNVNHFIDEIICIVYVISRLEDDTVEHIFAXHHHDAFHSYISIYKLLKHLEEIYEDQNKNQKCHHEYNALRQADKLFNIFYFNFMKLFSSLDYDDCTLMNDLQNKINNHLQNALSVCLENFTSLHCLKIFLQDVNNKQXVNYQLCSQLCTVIVKVMIIFDKHAATSLSVTTSIINYIKFILSFISESARSFIICYTCKILSHLFKNYS
Ga0272434_10044629F000597N/AMSMSDNSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIICDQLQIEFLTLIKAKSIQEFDDHYAKKLITHVIYLNLTVQDHTIDTAFILITXLNQHQMIFEKIXMNKIDLVINM
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