NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1004720

Scaffold Ga0272434_1004720


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1004720 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19008
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (17.39%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F076668Metagenome117Y
F080688Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100472012F076668N/AMTCLLLTSSFLTYALARKMSKSSMHSTDYYVIKETSVFKSITTTKKIMHMSNALFTDILMLCNRKDITNQTLLRCVKFENIRRLQKILFLKXSSKDXLKRLCMIMLKQTCYNIIFAFSALSXMLFKKSLKTLXFSLXKVSALFFHIITLVVEFSLTFCFMQTSTXXQFMSNTSSFKIEIXDLXRISXXILMSCFSRQTRKCLSSSVR
Ga0272434_100472022F002432GAGMMKFSDNSNIFSITSMILFYFNKEFHSXISFDSDITDYETTCKRLEARKANDSVIQMKELLNFDHQQLKRTKLIIEIQINKHRXNITYEIDDXVXLSFRNVKTTRLCKDLKDKQLDFYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLQSYSENFLSEQHSESLRSIIIKDNEH
Ga0272434_100472023F080688N/AMLQTLTIQAEMHXTTHSDVHQSSNFEDFHEKQTVELTTSQLSEHSIEV
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