NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1005324

Scaffold Ga0272434_1005324


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1005324 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16962
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (17.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024448Metagenome205Y
F065268Metagenome127Y
F079402Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100532415F079402N/AMRNKLKMNKNHFSIEEIKIAYVKSXVSETMIKHIALRMKDMIMNSFLEAEEILSIINKMYDDLNXHHTTQQQFLKLYQNKIFFHEF
Ga0272434_100532417F065268N/AMTRSTELESESMSTTRYETXNAERESLLSQNQTASEEEDMNASLNIKEKNMNVLLFDHEMIKISISTELNAXISIHEANNLVAFIKYIC
Ga0272434_100532423F024448N/AMMSMSNDSFASESLITECVLSNNEISYLLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIDTASILIIQLNQHQMILEKTXMNKINLVIDMQINFLRFSNFNSTSQKSIALLSSNKSITK
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