NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1005343

Scaffold Ga0272434_1005343


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1005343 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16919
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038484Metagenome165Y
F080688Metagenome114Y
F083460Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10053431F038484N/AMRSILMCIARMLSAFXRSSRIFIILLLRCNLCAEIALMSATRSLYFSHRXFHXSLXYCVIAMLSFVEIVVKKRMCRLHLNCIFASSXMKTFRSTIFLMTSEQEMTRLTLVKRARISSHACLISCVRSLTXLCSVILFCSMFRXTCSELMYVSVSRVSMFTLLNASATXCRVXFXSVSSLRSLFDSSSFLSRXCQTDASNAISDLTTAEYTCLAFVKIAFHVKTSRXLSVSILVTXFVSICRRCASHRSFVFSCISRTCTSDFDLITKLFIYMLVIMSNLFDFLVKCVSLYFSDANVASXVQAHFAQTSCALLSVLQISSVNLS
Ga0272434_10053435F080688N/AMTXAEMHXTTYSDVHQSSDFKDLHEKQTVESTTSQLSKHFIEVQLSDHL
Ga0272434_10053438F083460N/AMRMKSLNSQAYSDALLELNASSIEYATRRRLHELSNHCLNHEEFQGNSENDDENEAAEAV
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