NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1006260

Scaffold Ga0272434_1006260


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1006260 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14578
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028368Metagenome191Y
F035571Metagenome171Y
F075493Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10062603F035571GAGMTRLTLVKRTRISSHACLISCVRSLTXLCSMILSCSMFRXTCSELVYVSVFKVSMFTLLNASATXHRVXFXSVFSLHFLLDSSSFLSRXCQTDASNVISDLTTAEYTCLAFVKIASHVKTSRXLSVSILVTXFVFICRKCASHCSFVFICISRTRTSDFDLITELSIYMLVIMSNLFDFLVKCVSLYFSDANVASXVRAHFAQTSCALLSVLQISSVNLFLRLEC
Ga0272434_10062604F075493N/AMQSVRAVHEYMLRRLMTSFAVASQTIHVXNVSRVQISIQIYAFNSDVHCENAFCFLKIITHLYHLIAQMQSLCXDCIDVCDAFSVLFSLLISLIFVILRYCDAIACXNRCEEESALSASXLYLCIFLNEDIQKYYFLDDEXARNDAINSRQTNAY
Ga0272434_10062607F028368N/AVKIISFCNLDEILSKENYFDKSFLINALFILQNESFSLCSLINSNSVVYTIIHINLVDKICKELRIQFISLTKEKLIKKYDEKIFKKTIIHKILLNLIIESHKKLTVSMLITDINHHEVILEKSXMNKNEILLNMQINVIVFSNQLNTFISIFLISLSLKHSSXSRSTLFIFTFQSKISRMLKXFISTMIQKESFSIXSINVASFKKLLNCSKKNQTEVFTLFMKNINRKIAYNTQCNLNALNVSFIKKTTQNLKVIKVKLSSEYHDFLNVFDXVQLNKLSSNCFYNHKIELTSDSTFSCCXAYXMSSFKLLKVKKYLNENLSKKFITSS
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