NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1006497

Scaffold Ga0272434_1006497


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1006497 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14088
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F036994Metagenome168Y
F038484Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100649716F036994AGCAGGMXDRMIIEADSLVDLLIEEVDYRLVIKADSLVAREREVDRFTDR
Ga0272434_10064972F038484N/AMYIARMLSAFXKSSRIFIILLLRCNLCAEIALTSATRSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKKVYHLRLDCIFASSXMKTFRSTFFLMTSEREMTRLTLVKRMHISSHACLISCVXSLIQLCSVILFCSMFRXTCSELVYVSVSKVSMFTLLNAFATXRRAXFXSVSSLRSLLDSSSFLSRXCQTDASNVISDLTTAEYTCLAFVKIAFHVKTSRXLSVSILVTXFVSICXRCASHRSFVFSCISRTRTSNFDLIIKLSICMLVIMLNLFDFLVKCVSSYFSDANVASXVQAHFAQTSCALLSVLQISSVNLS
Ga0272434_10064978F005901AGAAGMNDKLIVNVDQFNDEIICIVYMMSRLEDDAAKYIFAXHHFDSLNSFTSIYELFNHLKEIYDELNKNQKSQREYNALRQADKSFNVFYFNFIKLFSYLNYDDCTLMNNLQNKINNRLQNALSICSKNFTSLFHLKKFLQDVNNKQRVNYQLRSERCIVIIKVTVISDKHATFLSMMTLIINYVKSTIFSIFKSARSSIICYICKTLNHLFKNCSKLNKINISASXAFILCLHEIIILKNKENEKMSSFKNSETKK
Ga0272434_10064979F000597N/AMKNVLISSTTSMSDDSFASESLTIEYILSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKTKSIQEFDDHYAKKLITHVIYSNLTV
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