NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1006576

Scaffold Ga0272434_1006576


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1006576 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13947
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F023763Metagenome208Y
F069514Metagenome123Y
F074204Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10065761F069514N/AMQNDXTKLLLMIEFIDNNALFSVIFLIFFFLNKDFHSRMSFEFNVIEYESSCERLQMTKVENISEHMNKTLKFARKSLVKTXEQMMKQVNKHRKEVDYCQNRA
Ga0272434_100657610F023763N/AMLRIECIFLFKKIFXATCQSIQLIIDLVEMISDAIVEFKQKLTSMSLMTTQLLSXHEILKIFMIRDHLDRVVKVFKLXSSFLESANNDHEFFIVDLVVTLDXVMLLXKVSDXMKNLILIVLRKNVFEHIVQSIDFYHNLVIXIIMMKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMSEXNSYSTIIIDESFIEVREI
Ga0272434_10065765F009580GAGMIYIQISERDLAQKLNFFRRQQDFFIYTDDITVINVYDMQSEELLIXAFFSNFAXMLQLAVVAQLLLVANFLDLRNDQNLILNDDNNEA
Ga0272434_10065766F074204N/AMIIFCILRQVQSRVLALALIDSEVFTYVFMNKFFAQQHHLFLHQLIYSCRLQEFDDQVTLIDDITHVVEITMILDKYIKRLFFYIIELSQYFIIMSLS
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