NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1006620

Scaffold Ga0272434_1006620


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1006620 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13864
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F002432Metagenome559Y
F024448Metagenome205Y
F048017Metagenome148Y
F080690Metagenome114Y
F094624Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100662010F002432N/AMKFSDNFNIFSVTSMILFYFNKEFHSRMSFNSDTTDYETTHEQLEARKADDIVIXIKKLLSFNHQQLKKTKLIIEVQINKHKRDVTYKVNNXVXLSFRNVKTTRLCKDLKDKQLNFYKITAKVSIFYHLHLSVSMKHLHLMFSSKLLXSYSEDSLSEQHSESFRSITIEDNEHXEIDNILNFKRYXDQIQYKVKXKNLDRNDE
Ga0272434_100662013F048017N/AMSLVNVSESAQRLEDHFQTILISDKVNVLSVESKTNLYQRVYIINQTDEFCSEYKQAMNDNKLKFHITKLKNCEIIDDVLFRKDLLXVSENMHTKLLQEVHNQSSISYFDNKXIINLVQRFYYXSNHXTTIQXYI
Ga0272434_10066202F094624GAGMKHYLQVFVNYMQNDXAKXLSEVKFIINNASSLITLASFFLINSNQNLRLNFKFSESLLKNLTSQAXNKLINVEEFIKKMNKLTEHLHDEMLIAQIIYEFNVNLSRRSCFKYFVEDKVXLNVCNFSITHLVIKLNDYNIDFFKIKHVFKNNSLIIELNLSAFMKIYSIFHVTLLSHITSDFLSNQHQKLQELIIVKNDKKFXYVNNILNFKRDKCYNSSLLK
Ga0272434_10066206F001951N/AMIMTKLRFIDLSRNEKERDEDTVETTVTEMMILEFKELLINAETLLTLMNETMMKTKQD
Ga0272434_10066207F080690N/AMQELQNQVXQHDVITSFLFIVFSSSIYIELNSQFLAMITQIIVQILNNQSFFIIHLSVNFVAVIIASRFKKLLNISEYERNKDRLNAXKQSLIQRINLNDDHYFSHRVKIIYVESXLIIDKKIHNLINQYRVNDLCIIFIFADXXHKLHHYCNNSFKTEDVHLYLCETLKQDMNSFVDYYNLFYQKKKCSLMKDFSLIDCMKRNVNYFTQVIIFFXXNLNETQLFIFHQXIQAFSDINKK
Ga0272434_10066209F024448N/ALIDTEAADYSFIDELITQNVCDHLQIESLTLIKAKLIXEFNDYYAKKLITHVIYLNLTVQDHTIDTTSMLITRLNQHQMILEKTXMNKIDLVIDMQIDSLQFSNFISSQKLIVLFSSNKIITKQKSLTSTQILKRFISSVITQLSEKSSSYSKIVKSFNSVNFASSFNSMNIAMIETAAYKSLVK

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