Basic Information | |
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Taxon OID | 3300031473 Open in IMG/M |
Scaffold ID | Ga0272434_1006620 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13864 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (7.69%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001951 | Metagenome | 612 | Y |
F002432 | Metagenome | 559 | Y |
F024448 | Metagenome | 205 | Y |
F048017 | Metagenome | 148 | Y |
F080690 | Metagenome | 114 | Y |
F094624 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272434_100662010 | F002432 | N/A | MKFSDNFNIFSVTSMILFYFNKEFHSRMSFNSDTTDYETTHEQLEARKADDIVIXIKKLLSFNHQQLKKTKLIIEVQINKHKRDVTYKVNNXVXLSFRNVKTTRLCKDLKDKQLNFYKITAKVSIFYHLHLSVSMKHLHLMFSSKLLXSYSEDSLSEQHSESFRSITIEDNEHXEIDNILNFKRYXDQIQYKVKXKNLDRNDE |
Ga0272434_100662013 | F048017 | N/A | MSLVNVSESAQRLEDHFQTILISDKVNVLSVESKTNLYQRVYIINQTDEFCSEYKQAMNDNKLKFHITKLKNCEIIDDVLFRKDLLXVSENMHTKLLQEVHNQSSISYFDNKXIINLVQRFYYXSNHXTTIQXYI |
Ga0272434_10066202 | F094624 | GAG | MKHYLQVFVNYMQNDXAKXLSEVKFIINNASSLITLASFFLINSNQNLRLNFKFSESLLKNLTSQAXNKLINVEEFIKKMNKLTEHLHDEMLIAQIIYEFNVNLSRRSCFKYFVEDKVXLNVCNFSITHLVIKLNDYNIDFFKIKHVFKNNSLIIELNLSAFMKIYSIFHVTLLSHITSDFLSNQHQKLQELIIVKNDKKFXYVNNILNFKRDKCYNSSLLK |
Ga0272434_10066206 | F001951 | N/A | MIMTKLRFIDLSRNEKERDEDTVETTVTEMMILEFKELLINAETLLTLMNETMMKTKQD |
Ga0272434_10066207 | F080690 | N/A | MQELQNQVXQHDVITSFLFIVFSSSIYIELNSQFLAMITQIIVQILNNQSFFIIHLSVNFVAVIIASRFKKLLNISEYERNKDRLNAXKQSLIQRINLNDDHYFSHRVKIIYVESXLIIDKKIHNLINQYRVNDLCIIFIFADXXHKLHHYCNNSFKTEDVHLYLCETLKQDMNSFVDYYNLFYQKKKCSLMKDFSLIDCMKRNVNYFTQVIIFFXXNLNETQLFIFHQXIQAFSDINKK |
Ga0272434_10066209 | F024448 | N/A | LIDTEAADYSFIDELITQNVCDHLQIESLTLIKAKLIXEFNDYYAKKLITHVIYLNLTVQDHTIDTTSMLITRLNQHQMILEKTXMNKIDLVIDMQIDSLQFSNFISSQKLIVLFSSNKIITKQKSLTSTQILKRFISSVITQLSEKSSSYSKIVKSFNSVNFASSFNSMNIAMIETAAYKSLVK |
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