NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1007129

Scaffold Ga0272434_1007129


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1007129 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13002
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F038484Metagenome165Y
F070711Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_100712911F038484N/AMCIARVLSAFXKSSRIFIILLLRCNLCAEIALTSATRSLYFFHHXFHXSLXYCVIAMLSLVEIIVKKRVCHLRLDYIFASSXMKTFRSTIFLMTSEREMTRLTLVKRAHISLHACLISCVQSLTQLCSVILLCSMFRXTCSELMYVSVSKVLMFTLLNASATXHKVXFXSVSSLHSLLDSSFFLSRXCQTDASNAISDLTTAEYTCFAFVKIAFHVKTSRXLSVSILVTXFIFICRRCASHCSFVFSCIFKTHTSDFDLLTELSICMLVIMLNLFDFLVKCVSSYFSDANVASXVQAHFAQTLCIYRKYVAYVACNIHKTRSLCXFLS
Ga0272434_100712912F070711N/AMKDVLISSTTSMLNDSFASESLTTKYILFKNKISYSLKSLIDIEAADYSFIDEVIMQIVC
Ga0272434_10071296F000597N/AMKDVLISSMINMLNNSFASESLTIECVLSSDEISYSLKLLIDIEAADYSFINEVIMQIVYDQLQIESLTLIKAKLIQEFNDHYAKKLIIYVIYLNLTVQDHTIETAFMLIIQLS
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