NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1007584

Scaffold Ga0272434_1007584


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1007584 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12289
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F089602Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10075842F008169N/AMTLDRETDQLNKLSKQRDDEIKELKARLQTKEITSSDFIYSERSRSQKIPDSFXFTDEKNSTXKNXYGKIQNKLEINVDLFSNERVKLSYVHFRLFNDAADVIQFRRERDCVNFYKIVDDLLKELAELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQFQRLSFYLKYYEKQLIVDLKDKINPRLRFIXIDQLVQSDSLKEILFYLIHLNNDQQVIXEIKNKVNLIKRVDDLSKIIFHKAVVTQSVNHSKSDHLKSCDAILTSVKEADVLVETCFICHKSDHSSRECSDRPIRINVVNNEYNHFKFNFNSNFDSKN
Ga0272434_10075847F089602N/AMKDKCLSFIKISSEECNDLSDITDIVFHAVNQQEVFHQETFFLLIKEIVVIDKAICVLL
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