NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1010465

Scaffold Ga0272434_1010465


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1010465 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9483
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003820Metagenome466Y
F009580Metagenome315Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10104653F003820N/AMKLFSYLEYDDCILMNDFQNKINNRLQNALSVCSKNFTSLTRLKIFLQSVNSKQRVNYQLCSERCTVIVKVTVVSNKCATSLSVITSIINYVKLIISSTSKSVRSLIICYICKIFDHLFKNCSQLNKIDTSASHAFISHLHEIIISKNKKNEKISSSSKNNETKN
Ga0272434_10104656F009580N/AMRRLKLVNKIICIQISERDLAQRLDFFRRQRDFFIYIDDITVVDVHDMQSEELLIXAFFNDFAXMLQFAVVAQLSLVADFLDLRNDQSLILNDDNDKA
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