NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1033645

Scaffold Ga0272434_1033645


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1033645 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4446
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F055317Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_10336451F055317N/AMFIDEKNFTXKNXSLDIQEKLAMNINIFSNELYKLSYINFQLTDDVVEVTQVRRNLNCDNFYLTVNELLKKLAQSFHDSDKKDNYHRKYINLIQELKKFSDFFNQFQQLYIYLKYQKNVLVIDLKNKINSRFXIFXTAQMKSLIKLSDIXNYLIRLNNEHKAVXKIKNKLLKCDDSKIIISKATIAVQSFALKSDXSKSRSAVLTNVKNADILVEICFVYHKSDHSFRECLNQFIKVNTVEKNYDCFKSDTESEFKSKN
Ga0272434_10336454F002432GAGMIEFSDNVNMFSIISMISFYFNKEFHSQMSFNSDTTDYKITHERIEARKADDIIIQMKELLNFNHQQLKKTKLIIEAQINKHRRDIIYKIDDQIXLSFRNIKIMRSCKNLKDKQLDFYSIIVKVKTFYHLRLFTSMKHIHLMFSSKILQLYSNDSLSDQHIESLRLITIKDEEHXKINNILKFRRYXDXMQYKVK
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