NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170818_110601020

Scaffold Ga0170818_110601020


Overview

Basic Information
Taxon OID3300031474 Open in IMG/M
Scaffold IDGa0170818_110601020 Open in IMG/M
Source Dataset NameFir Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)638
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter palustris(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Mazerulles, Grand Est.
CoordinatesLat. (o)48.7585Long. (o)6.3578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028177Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0170818_1106010201F028177N/AWALATSLALVPIAAFVALALVVRDVNSEEEHIGAGGDEPFLKWRKRTRLFQQVVVGLDTMLERWDAASETNCKRLEMLTESVGEVIGLTENAVTEISKNFRVVVAKAHEQTEAAMSILQEGEGQRSGVLSLPEFIKAYDSQLQNITTHMSGFSAAADDVAMHQKRVTEHAKVMEETIDGLRNMASQISRIALDGSVAMTSQTLNPRDFVDMT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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