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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031508 Open in IMG/M |
| Scaffold ID | Ga0308394_1000788 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16235 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (92.59%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002982 | Metagenome / Metatranscriptome | 515 | Y |
| F005028 | Metagenome / Metatranscriptome | 414 | Y |
| F005631 | Metagenome / Metatranscriptome | 394 | N |
| F006418 | Metagenome / Metatranscriptome | 373 | Y |
| F007976 | Metagenome / Metatranscriptome | 341 | Y |
| F018115 | Metagenome / Metatranscriptome | 236 | Y |
| F025895 | Metagenome / Metatranscriptome | 199 | Y |
| F031016 | Metagenome / Metatranscriptome | 183 | Y |
| F087842 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308394_100078811 | F031016 | AGGAGG | MATIRIWSGSRHVVLGDEFVKYEEFEGETLGACWEEENNRGTQTTFYQTNDGRIVVHVVRWSRWENEATYAYVHVFPSMGGVNGAAAMFWRELRKAGIIPPLTVGLDE |
| Ga0308394_100078812 | F002982 | GGAGG | VKIQFERHPHAICAVLTEQSACDRIITVARPSDAFDVLALDIHTAALKPLDALFSLPRVVCVEIERREGGWRVEVVYWHKTHGTLAQYEEDAATLSEALARCVWALAR |
| Ga0308394_100078813 | F087842 | AGGAGG | MITIWGGYIAAGDARVYLISFDGERIGGMSERNVQRTFYRVHDGRVVVHEVRIGKRRCGRTYDQALVYVFSDLAQACMHLTVNPQHIDPTRGEVTLPRVDAPTLTLDEWARGAGTY |
| Ga0308394_100078815 | F007976 | AGGA | MPSTELSNFLRVALDVQAPPYPGIHVDFGLMVASNGVMLVTKRFDDKVFLRGKGAISPKAAKVLAALAEATWIGSIEVNDNRVTVTAQSTWYDEKAGAEVAGGYREVTLPELYCRQIPIKRMVEVLDDKALGWEVLPLSSNPKLKTLKEANAKDYVALVDSPHGGYELFRLRDIDDTHGYSVAQLRCGLRLFGKNSRLSVRRNAKGWLAFSDQWGGVFAVTPFVKRD |
| Ga0308394_100078817 | F006418 | AGGAG | MPKRRSAPAPRPAREIVIEEGSDYRILFDRESKDYAVEYRGQPVGWRASESEARRLIEALRYEDAKRE |
| Ga0308394_10007882 | F018115 | AGGAG | MNDAEERFVRWYAHLAADAPLDRHAARALLRRALADREALAEYLLNSECAPSLLGEFIYRHWNDALSDAARGASLRLASRTLRALDCLEERDRWAVLEWMQRGVVPSTRILCRLCEEIDD |
| Ga0308394_100078823 | F005631 | GAG | MRLSVSVDVDNALRKLLPRSAQIEAALDAGAAAAHSVMQVYPPPPTGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARFVYGMPQARVHRGRWASLKDATEAALKEALAVLKERGR |
| Ga0308394_10007883 | F005028 | AGGAG | MRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTFIRYFLRYHVPTLRESVAVGETYTDPDAATEAHLGLCWRLDEGVLTVYTDLHSAAKRLRQPYRDLAAVCLRWGYVHETVVQMLARVLERK |
| Ga0308394_10007886 | F025895 | GGTGG | MTDLIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAVDWVRGVRGVPAGVASVCFFVLAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIRALQWMVYFFIFFDIVTDFGEAVALVDVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLTILCAVTALLLAANVRATGGGGGGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |