NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308394_1003751

Scaffold Ga0308394_1003751


Overview

Basic Information
Taxon OID3300031508 Open in IMG/M
Scaffold IDGa0308394_1003751 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6130
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002978Metagenome / Metatranscriptome516Y
F009403Metagenome / Metatranscriptome318Y
F012676Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0308394_100375110F000855GAGGMDWLEDFFSKIVGWFDQISASVHNATIGWINGLIDIWNGWMDSLLHPAQAMPSVPALRWIVDWLGGIADYTRLMYMLVDYVAYASVVQQALVAQLAIVAVGLGFRAWLVIRRIVLVS
Ga0308394_100375112F000642GAGGVQEISVALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRVLAASYGDSGIVADGVTYPASLPALRAGRELIWIARCDAAALIDHQALERARESAALASLWRGGGQWLDLLRVMGVLLPAVFAYFTWAQVASLQSLVAQILALVGK
Ga0308394_100375113F002978GAGMRDWRVMLVPWADRRLWFIQARRGRRVVWGVVYDAADPESVALARRAVATLRSAGADCSALPSPLPGAPPGAPGA
Ga0308394_10037512F012676GGAMELPAMVKSSVERNDMNSIKIAAGWDGSPMSLTHPEHGWIRFLEAREIAYAAYLDEPAGWRLVVCDERRFTRALHALRKYGVYGICEWTYDIH
Ga0308394_10037518F009403AGGVFRITRRGRGSGRAPALSVVCSADGARLEVREGRYGQGALYAYCDVDDTLAAHTLLLTFADMRARVIYIHDSLPLISERKFLDAFSGLGPVLPDADSLPDALPDADGSSS
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