NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308394_1009049

Scaffold Ga0308394_1009049


Overview

Basic Information
Taxon OID3300031508 Open in IMG/M
Scaffold IDGa0308394_1009049 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3437
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037460Metagenome / Metatranscriptome168N
F052924Metagenome142N
F052925Metagenome142Y
F069505Metagenome124N
F093910Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308394_10090491F052924GAGGMAKAQYKTEEERELKQLSIGLSYLTSEIRDFTRWIRTAPDPAGKVQQYRARLDRIFDRIGQLRETDPNRVAAMERRIQTARQDLENALQQAARGVEEPKSFFRRLYDGITRVTITVLQT
Ga0308394_10090492F069505AGGAGMQWCSELAYALRVAQRQCDEHVVRNALRAKFPAMPAEEIEGCADVACKAVTAARLLSKAETLDDAVQAFRAAPELDDLPQPGADIFAQVYSIFENEKSRLFYSRVFGESLPGSSEDEKVVYAFLSFLEALATALERGVGG
Ga0308394_10090493F093910GGAGGMDVRRYIRPRLWVSHEELLASPLEGWVVGVFEDTTYGERRPRLVLEIAQDDGVRRRVPLNQASIENVATAWGYESKNWIRHRVRISIAHKNIQGKYVQVRMVSPITTVPPIAELPEDPNPPQEPDDVPF
Ga0308394_10090495F052925AGGAGMKRDCFYYWEELRKIVEGFTPYEEDVRKLTALERAFVRANEAWETAWAVASQATADWDKRHAVASALLWLEHKGLYGGGCFVPGTGTKRLRFFRSLGKGRRKATDGPAWTEAIRQAALKHGWCDWTFVDEGLGVHFEPHPHETEALREFTLPLREVLFLDGNESADAVEAWVGACKHAIREFGRPRPYGVGEKTRDLFLTAVQEYTEAKEALTKAREREAAAGQKAEEGQDAGNS
Ga0308394_10090496F037460GGAGGMPEIADGIAFFDAAVRLLRKGWPPMPPLITGYSNYIRYGSVYWHCENGPLVLRWAEKVRQRQDWFAYAEPLLAYFFPGHPFRRPEWRPPEGITEGENPSNSVGWPAKALVLEWKRAARKRQPLWHPAHYVVYYRFFDNRVPEWNAFYLFLTVFLRRELEALQAARPAEWLLLDGPAPIDSLSPAPQFHLAPGLQASWQDWLKATKPVAKPYHFKRHKCLLA
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