NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308394_1026483

Scaffold Ga0308394_1026483


Overview

Basic Information
Taxon OID3300031508 Open in IMG/M
Scaffold IDGa0308394_1026483 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1590
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y

Sequences

Protein IDFamilyRBSSequence
Ga0308394_10264832F001381GAGMHYVIATLYVLLWLALAALAALWLPRWALPAALVQLAVAYVMLRAVWLTVARDDDGA
Ga0308394_10264833F000642N/AMQTISIALAVCACAAAIWYMRRRDAGAGRVRGWLLLYDDVGGWRVLAASYGESGVVADGVTYPASLPAVRAGRELIWIARCDAAALIEHQALERARESAALASLWRGGGQWLDLLRVLAVVLPAVFAYFTWAQVSALQSLVAQILALVGK
Ga0308394_10264834F002978GAGMRDWRVMLVPWADRRLWFVQARRGRRVIWGIVYDADDPDSVSLARRAIATLRAAGADCSALPAVLPGSPGAPGA
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