NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308394_1026505

Scaffold Ga0308394_1026505


Overview

Basic Information
Taxon OID3300031508 Open in IMG/M
Scaffold IDGa0308394_1026505 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1589
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002795Metagenome / Metatranscriptome529Y
F098761Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0308394_10265051F098761N/AFQTVDVRLRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFGLRLDTWYGVYDTLYGASAGDTLAILPSPAPALAPARRRA
Ga0308394_10265052F002229GGAGGMVMLLTADGVEEVDYTPSDAEIRASLDDPGLYGMVLGVVTWMRLSSGAGWWTVLFGKRLVVTLAPVGWCWVMDGLGNRGYWSATLSAVVADVCAMCGGCVEED
Ga0308394_10265054F002795AGGAGGMATNDGLVLRGMVAAYREFVSRTNGKLYRVITVYGDLVAGEAVLCTVDGYDVFVDAPGYARGELVELPARIQFVRDSSGRPALRLYVDEGVR
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