NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308399_1000219

Scaffold Ga0308399_1000219


Overview

Basic Information
Taxon OID3300031509 Open in IMG/M
Scaffold IDGa0308399_1000219 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20258
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (81.48%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Associated Families11

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F006418Metagenome / Metatranscriptome373Y
F007404Metagenome / Metatranscriptome351Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F012577Metagenome / Metatranscriptome279Y
F014738Metagenome / Metatranscriptome260Y
F067304Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0308399_100021910F067304N/AMRCDQRLVPPLRAQRRKMLRDAPERLTIKRVGRAVVDVSAQHQFCVRGGQRREVEQT
Ga0308399_100021911F004791AGGAGGMDKPAEIYDIDTIRVDRNALTIREAATVLNNELTAPVVARLVRKAIGTQADRFPLRALKAVYERVLPKIFEPDEAVRSRVAGLVPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDSIGDEGNE
Ga0308399_100021912F005302AGGAGGMSHSGVLAGLYAGNFAVEISTDATTWTAVSNATVKVDDVELNRPSGEAYVGGSSDYATVTVGKREPVELTLTFLYNEDTNSAANTIFDQFQSASPRLGVRWSPRGLVGSARAYGTSNDGGTSFGVGVITNVTLSALDPSDADPYVAMVTVRTPSLRQYTLGSSPTNLNPAS
Ga0308399_100021913F002970GGAGMSYSSVTDIIELLAGLAVQYNSAVVPVRRLSTQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVARLRFAWLTRGDVQLLNVSGIVDVIRYGERAYEGVAMTTRFAHLVRAPSS
Ga0308399_100021918F005631GGAGMQVSVSVDLDNALRKLLPRSARIEAALDAGAAAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTLRIVENTASYARYVYGMPQARVHRGRWASVRDAAEAAKKEAIAVLKGR
Ga0308399_100021922F010840AGGAGGVNLPFSQPLDKVTYGALAAATVIILTWALREFVGIELPAEVQAALAVIFGYVVSYHIPLNETEAEAIARKYYKHK
Ga0308399_100021923F006418AGGAGMSKRRSQPKTQPAREIVIAEGEDYRIIFDRETKDYAVEYRGEPVGWRAYVEDARRLVEQLRYEDARRGE
Ga0308399_100021924F007976AGGAMSSTELARFLDVALDVQAPPYPGIHVDFGLMVASNGVMLVTKRFDDKVFLRGKGAISPKAAKVLVALVEATYIGSIEVNGNRVTVTAQSTWYDEKAGAEVAGGYREVTLPELYCRQIPIKRMVEVLDDKALGWEVLPLSSNPKLKTLKEANAKDYVALVDSPHGGYELFRLRNIDDAHWYSVAQLRCGLRLFGKHSSLIVRRSKDGWLAFSDQWGYTFAVTPFIKHN
Ga0308399_10002193F014738N/AMKLDVLLLISAFALAFVHPDAAQVAATAVLVLLVTRIERGRRARKKKSAPAVR
Ga0308399_10002194F007404GGAGGVDIVEIFQLLAAGHNGLTAVDYVWNAVFGAIGAATAYLADNEGEVILPRYDAEQHSIELGALGRVLVGAGAGTLVGYSGYVPFIAGVVAPTLLPILIDKVTAFVGRGRK
Ga0308399_10002197F012577AGGAGGMLVAITEPHQHFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSITWHALGFGALQREARISVVQNVISTTKWKPVGSGFMPNSGYNSRPDLWEYEFISGNLFITIRIVTKRTFTISNSTLFFVAYLYAQPERYATITSNERLYVGVTRTGLATGVWVAPVTAIPQPNTYTLTLGAFSSINNEGVITASTCYGWVVGVQASGNETTVGATSVAFLARINDPGTGGINAGPLSTALIARGGCCDIYLPSQTIVDIENPNANLREIIEHVRTDYSSVRYHLKRFLRDRPRPTIDFRTDSTLVWRFPETMRVVDISKAPSRIFAQYHGYWTDHLTATTTIQSLESRRQLARRVAGVGEYSSKTTADARRDEAAIAMDRQIAPITVELDNSRYELLTREGVAVPNWAADVSDYAIVPGYYRNAKITARVITRERTTYTVSFNPDDFVTALR
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