NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308399_1000290

Scaffold Ga0308399_1000290


Overview

Basic Information
Taxon OID3300031509 Open in IMG/M
Scaffold IDGa0308399_1000290 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18007
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. FACHB-261(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051766Metagenome / Metatranscriptome143N
F062487Metagenome / Metatranscriptome130N
F079732Metagenome / Metatranscriptome115N
F091520Metagenome / Metatranscriptome107N
F093361Metagenome / Metatranscriptome106N
F106198Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308399_100029010F106198N/AMSNNLNIQEVIRNRHAVKGKQYLMLYDTDFNTQLLIRQRFYFVPGDPDVFTPIPPVIEERLRPLNPKLGVPTALPFEPRECTACFDNPQVQQGFSEYKVFIPFRPTDYKLKQSIKEIMQLPNVSRVKYSGETHVRGTKRIV
Ga0308399_100029012F051766N/AMPIKKQGIISGQYTFSGVEDNGLVTLTSQVDDVYIIEIQALTQLFSFISPYDVPIMVDSTVYQITNATDYASASNTLIYSTINTPKGNKTIIECEIKAIGIRPNSSIIFSTQEKWIIYPEKIYEIVNAGTQSFTFTTNSIAYLRLTGKRILPTQLTSNPL
Ga0308399_100029019F093361GGAGMHEFFTVEYDYRPESDNCYVAVVRLWIKADEDKLLPKCYVNSRITLFGERLYPNWGSKMEWENSVYRVGEVTLTSDLDWEIVEVRVENFLKVSACILGKVTRKNLERERVIPSNFTREIFRTNEHC
Ga0308399_10002905F062487N/AVENVDVNNMVALLPREDRFALGINNYPRSIVWSAIMLLKANKVLNQSPMYLNAIRFGANRTTILIEAAFPYDRDVFTTTGGDIVSAVLPITGLSPYNGVLPIPPAEPVFLELPDPDDSRLDSLEKFLVWCCMQYKVGLNRFTNLGDAISVLFFDEQQTGNYPTLRVKVNLPYSYTAYCCTGSIVRAVYELFVDNPCGSGVLSIDGRVILFDNNVLVDLGLIP
Ga0308399_10002908F079732AGGAGGMPLMDATKMIEEYTTDFGTKVKNLGIKILEGYADKVSEYIERTEKNLCPSGNLFQPRALIATFEDGTKVKYPIGDRSNLVARARELLSNGAVCIDYEGEYWPYVPSTLILGISYRSTPLGGFTNDGSKTTGTFNYQSDILGTVVQPFAIESEPAGLVTTAIACLSGIVYGSGFCTNTRSLNIKARRFRGKGLVAGTTKKTYSRDIKMSSPNPTNCGAANAPNYYCLSYIGESIKNLHLLLPES
Ga0308399_10002909F091520N/AVASYVGNYVNDVGIQYKNIVLNTYFYDNGNRTSTTYDRDEMYLPTVFKTSTVRLSDKIATCKIEYSTLRVAQCYISDNVYYEIPCPFQGGTDEFTAFFTELNNNSMFRLVNLKGESIPYGYYLVLSSITR
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