NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308399_1000916

Scaffold Ga0308399_1000916


Overview

Basic Information
Taxon OID3300031509 Open in IMG/M
Scaffold IDGa0308399_1000916 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10131
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025421Metagenome / Metatranscriptome201Y
F026171Metagenome / Metatranscriptome199Y
F028964Metagenome / Metatranscriptome190N
F059420Metagenome134Y
F093039Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308399_100091610F026171GGAGGMSRELSALRKAVRAARLADVPVAQVLKVLADMPEARAFKLAPDVLRRMLLETLPEQYAVFLLDRAGYRVEMSLSDLAYFAKHDEILVELVVSIILYLDKE
Ga0308399_10009162F025421N/AMIDLTKVRRIDRSAPGSFMEYARLQAIITEGDLMAIARALESYGVDTSQLSFNELVDVVKHIAGEPSPLPVTSATE
Ga0308399_10009163F093039GAGVTLLLYLAETWGVAPWVLERELSLFWAEAACEYEREKVRRVKREMRRYG
Ga0308399_10009165F059420GGAGMEIELYRGTSALTTLHYRNVPGQYSWVLRDLQGDLMDEVEVITREALGGRTLVAGLQGRARRIVIVLDVQGKSMVNLHAAIRELESHVRWRKGTPLELRVRAQSDNPWSSVGVVLEQMNAQFEDDQYRAVVTMRFACRSVYWRESVGVVQASNNTLTGIAFVVNLSEMSFTPITGITEPITNIEYRSPSNEWIIFTNTQVWRAPITGGAATLIGSVTGSNFMRGCVTHDENIIAVALGVNQLVRFTYPSSSPTVLGSFNGIPNRIRRFGDQYIAVGEFSQYRTTGGLAGMVVVNINGDILNTFSPFPTSVIFPGGGRIRDVLYKDNVRVAIAHRQPSPQRSWLVVWSEQVSPYFVAEGESTWSPTEIDQSSEIDNVIIGADSPIHAGRLFGTLCRLKDLSGVVPYAYPAESVVAVQIGCAAERFLSASSEPRKVFRLGNDGTVMPLFSSNANSFAIRRKDDLMCIGFRSVATLWTPISVDVGTIANTGTTAEIVPKLGSLSVPVFSCYSKVDSEIFGEVIDPHTQASSYEPKYHGGGAITPLPGTSYDRMFRGSANEEIERYWFAVGGSVSSVNVEINRYKHDWR
Ga0308399_10009166F028964AGGMIGAEVTLALSSLSGWGNRTGAVALSGSFERRAMDVATCELEISLSASSYSLSAYGDMLMVMLPDRREYYFITAIERRNTYYVVRGETFLRYLRDYYPDRYAGTSDAQWSGDAARGVLISLRPKESVPMHRGGAGLRERLIVVPDNVAPSVNVSTSFAWASRLESAKEITRLAHAKGFPLVWWFECGRWSDTKNEVGTYRIEPSVSLVFAHSLQRFGVPRLQWNKTIRFEAWAYDRSQPTAGVALGYGLGVDRDVARAWSPRGLFGIFTYWEDRIDGRATGSSAAAQAALMRWRPVEAGAGQVFADETPRLGDQVFMVAADNQRCAGIAYVVGERYTVAGAQVDSMELGVMQI
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