NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308399_1000980

Scaffold Ga0308399_1000980


Overview

Basic Information
Taxon OID3300031509 Open in IMG/M
Scaffold IDGa0308399_1000980 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9733
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N

Sequences

Protein IDFamilyRBSSequence
Ga0308399_10009801F004024AGGAMRSERDYVRQPSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLAIATPRLYDRIAPIIESAAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR
Ga0308399_100098013F000855GAGGMDWIEDFWSKVISWLDQLSASIHNGIIEWVNSLIQIWNGWMDSLLHPARAMPSVPALRWIVDWLGGIADYTRLMYMLVDYVAYAAIVQQALTAQVGIVIVGLGFRAWLVIRRIVLVS
Ga0308399_100098015F000642GAGGVREISIALALCAVAAAVWYMRRRDVGAGRVRGWLLVYDDLGGWRVLPASYGDAGIVADGVTYPASLPVLRAGRELIWIARCESAALIEHQALERARESAALASLWRGGGQWLDLLRVLGVVLPAVFAYFTWAQVSALQALVAQILALVGER
Ga0308399_10009803F002229GGAGGMVTLLTADGVEEVDYTPSDAEIRASLDDPGLYGMVLGVVTWMRLSSGAGWWTVLFGKRLVVTLAPVGWCWVMDGLGNRGYWSPALSAVVADVCAMYGGCVEED
Ga0308399_10009805F002795GGAGGMPVTSGLVLRGMVAAYREFISRKDGKVYRVVTVYGDLMSGETVLCQVDGYDVFVDSPDYSRGEMVELPARMQFLRDNSGRPTIRLYVDEGVR
Ga0308399_10009806F002372AGGGGGMPTRREDALWSVVHRRASHLRALLDGLDDVDVSIAYELHYYPYAIVELLRVREDAPPLVLRSLYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
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