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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031509 Open in IMG/M |
| Scaffold ID | Ga0308399_1001012 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9594 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (82.35%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002982 | Metagenome / Metatranscriptome | 515 | Y |
| F005028 | Metagenome / Metatranscriptome | 414 | Y |
| F006418 | Metagenome / Metatranscriptome | 373 | Y |
| F007976 | Metagenome / Metatranscriptome | 341 | Y |
| F008499 | Metagenome / Metatranscriptome | 332 | Y |
| F010840 | Metagenome / Metatranscriptome | 298 | Y |
| F025895 | Metagenome / Metatranscriptome | 199 | Y |
| F032180 | Metagenome / Metatranscriptome | 180 | Y |
| F043176 | Metagenome / Metatranscriptome | 156 | Y |
| F048124 | Metagenome / Metatranscriptome | 148 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308399_100101210 | F048124 | AGGAGG | MATISIWRGYRHWNWDEENDYEVVTYEDAEEIGAVRFEDADSDIQYRIIRWYEGIVVFFVKREGHYCEAEIFEYPDLEAAAKDYAFILRKAGVI |
| Ga0308399_100101214 | F025895 | AGGA | MNDVIAWIVAAGVIFALINSSAADGILRALDLSDNLRRAADWARGVRGVPALVAAICFFIMAYVFGALAYRYDLVPTWKFIQPVANDVLSTGAEWLTLFAVFLTLLPTLIELATAGLVQRDIRALQWVVYFFIFFDLVTDFNEAAALVDVWQRSGLFAPLPDSLEGAAVVMVWIGWTFAASFAFEFLAVLFAVTALLLAANVSASGGSGGGGR |
| Ga0308399_100101215 | F032180 | AGGA | MWWKIEEVPEQELENWANAVGRFERAAKRDVAVRAAGAFVIYDLNGVLGYVAGREAPDGAYLVERWVRKKKGWTLYE |
| Ga0308399_100101216 | F005028 | GGA | MRDDDLHAAMRFFAERLRGVDVTEAGLRRWTRHKLRNDARAVAELMLTVGYRPTYIRYFLRYHVPTLRESAAVGETYTDPDAATEAHLGLCWRLDEDVLTVYSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQLLAKALERKAKDVVED |
| Ga0308399_100101217 | F008499 | N/A | SRLTTFRSKSEPRWKRKERSVLKALQATFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKNKGDGDA |
| Ga0308399_10010122 | F010840 | AGGAGG | VNLPFSQPLDKITYGALAAATVVILAWALREFAGIDLPAEVQAALAVIFGYVVSYHIPLSETEAEAIARKYYKYK |
| Ga0308399_10010124 | F006418 | AGGAG | MSKRRSAPAPRPVREIVIEKGSDYRILFDRETRDYAVEYRGEPVGWRAYVEDARRLVEQLRYEDARRGE |
| Ga0308399_10010125 | F043176 | AGGAGG | MQNYRIWEGERTFLPGEDTSKFTIIEIIGEELGWFEDVIDGKTYYVYQTEGEVVINIVEQNYGIGEPSRGSIHRYSNLEEAAADGFEQALKDMRLI |
| Ga0308399_10010127 | F007976 | AGGA | MSSTELSNFLRVALEIQSTPFSGIHVDDGVAAATDGVMLVAKTFSGEFLRGEGAISPKAAKVLAALAEASHIGSIEVNGNRVTATAQTTRYDEKTGGEVAGEYCDVKLPEFYCPRAPVARMFATLTDEGRGWQQIVENPRLKTVKEASAKDYVALVDDPRNGGELFRPKADNDTHWYSVAQLRRGLRLFGKNSRLSVRRNAKGWLAFGDQWGYTFAVTPFVKHNETQR |
| Ga0308399_10010128 | F002982 | GGAGG | MKIQFERHPQSICAVLTEPGECDRIITVARPSDAIDVFALDVSPAAYKPLDALFALSRVVLVEIERREGGWRIEVAYWNKGLGTLAQYETDAATLSEALARCVWALAR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |