NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308399_1001132

Scaffold Ga0308399_1001132


Overview

Basic Information
Taxon OID3300031509 Open in IMG/M
Scaffold IDGa0308399_1001132 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9045
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F007976Metagenome / Metatranscriptome341Y
F008499Metagenome / Metatranscriptome332Y
F025895Metagenome / Metatranscriptome199Y
F032180Metagenome / Metatranscriptome180Y
F044842Metagenome / Metatranscriptome153Y
F048124Metagenome / Metatranscriptome148Y
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0308399_10011321F007976AGGAMSSTELSNFLRVALDIQATPFSGVHVDDGVAAATDGVMLVAKTFSGEFLRGEGAISPKAAKVLEALAEATWIGSIEVDGNRVTATAQTTRYEENVGEVAGEYCDVSLPEFYCPRAPVARMFATLTDEGRGWQQIVENPRLKTVKEASAKDYVALVDDPRNGGELFRPKEIDDEHWYSVAQLRKGLRLFGKNSRLSVR
Ga0308399_100113210F025895AGGGGGMNDLIAWIIAGGVILALVNSNVADGLLSALDLSDNLRRAVDWARGVRGVPAGVASACFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDYREAVALVDVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLTILCAVTALLLAANVRAPGGGGGGR
Ga0308399_100113211F032180AGGAMWWKIEPIPHQELEEWAHAVGRFERAAKRDLDVRAAGAFVIYDLNGVLGYVAGREAPDGACLVERWVRGKRGWTLYE
Ga0308399_100113213F005028GGAMRDDDLRAAMSFFAERLRDAEIDETRLLRWTRHKLRNDARAVAALMLKVGYRPTFIRYFLRYHIPEINKNAAVGEMYIDPGAAPEARLGLCWRLDEDVQTVYSDLHSAAKRLRQPYRDLAAVCLRWGYVHETVVLMLARVLERK
Ga0308399_100113214F008499AGGMKFRSKSEPRWKRKERDALRALQATFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKNKGDGDA
Ga0308399_100113215F004307AGGAGMFKELIQNGSQSERPELNGAYIGRFLGVKERQRPTFETRNDPEPTLEDVFVFEFEVVDAEFDAPVRVSKWVRKPARLTHPSKNGKVTNLYRVLAALYGVAQMTDAQLERAEEFVENEAIGREYQLTLETKPSGWVEIVHIAPVRARLRKVKEDEVPF
Ga0308399_10011322F002982AGGAGGMKIAFERTPTAICAVLYEPGECDRIITVARPSDAIDVFALDVSPAAYKPLDALFALSRVVCVEIERREGGWRIEVAYWNKGLGTLAQYETDAATLSEALARCVWALAR
Ga0308399_10011323F075805AGGAGGMRVRVWHGWRGVHGNRDVSQFVWIEFDGEPLGSLVVEVDEDRTDERAFYRLYDGRLVVAEHRYGDWEKGGVDYGVVSVYADLDDAARRGWRDDLVRIGAYDAPTLELDEWLSRYEEEE
Ga0308399_10011325F048124AGGAGGMATISIWRGCRHWNWDEENDYETVTYEDAEEIGAVRFEDADSDIQYRIIRWYEGIVVFFVERKGHYVEAEIFEYPDLEAAAKDYAFVLRKAGVI
Ga0308399_10011328F044842AGGAGGVEEIELWCGVRGNTFQSTQCVRFVGEFLAVVDVARADEWVERCVLYRTEDGRVAVHQMRLSLLDDGIDIAEAYILPALDAGEGVREQR
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