NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308399_1001400

Scaffold Ga0308399_1001400


Overview

Basic Information
Taxon OID3300031509 Open in IMG/M
Scaffold IDGa0308399_1001400 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8059
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F009403Metagenome / Metatranscriptome318Y
F063723Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0308399_100140018F063723N/AGLDLVSNIPVRGARRIATLDDLAALRGAVLVWDEVQVSLDSREWSSEAARSLTRDMILWGKRGVICVYTSPSFAAVDVRLRRLTQYVYVTAGRYRRSGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGVYDTLYGASAGDTLAILPAPAPALAPARRRA
Ga0308399_10014004F000642GGTGGMQEISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRVLPAVYGDSGIVADGVTYPAALPALRAGRELVWVARCESAALIEHQALERARESAALASLWRGGGQWLDLLRVAGVVLPAVFAYFTWAQVSALQSLVAQILALVGER
Ga0308399_10014005F001381GAGMQYVIATLYVLVWLALAALAALVLPIWALPAALVQLAVAYVMLRSWLTAAAGGDD
Ga0308399_10014006F000855GAGGMDWLEDFWSKVISWLDQLSASIHNGIISWVNSLVDVWNGWMDSLLHPAQAMPSIPQLRWVVDWLGGIADYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS
Ga0308399_10014008F009403AGGVFRITRRGRGSGRAPALSVVRSADGARLEVREGRYGRGALYAYCDVDDTLAAHTLLLTFADMRARDIYIHTDIPVISERKFFDAFGSGPVLPDADSLPDADSLPDADADSGA
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