NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308399_1003549

Scaffold Ga0308399_1003549


Overview

Basic Information
Taxon OID3300031509 Open in IMG/M
Scaffold IDGa0308399_1003549 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4865
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026171Metagenome / Metatranscriptome199Y
F026459Metagenome / Metatranscriptome197Y
F061873Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0308399_10035492F061873AGGAGGMNEKIETLSDLISRGLAIRNQRITEEKARIAAFNEKLAREREEREREIRALLPAPLDDLAEVDVGVTHAYIYVRKPFPGEGKVRIYASKKDDQWHLLEFAAYNPDGYYLKFQTLEEALAFAAGALEI
Ga0308399_10035494F026459AGGAGGMNSQKVQMLRSINQIEFTIRPPVNSLSMFIAALTAMGSGETVQYALYRVERRAPEDVIRDAEHLINILYEIGEGVIALKLERRLKELREGQSSDAIAGLWEIVDLLPHDAYMSFGFATECAQARCGEHPNPQELLRDLDFDREGFRFGPAWEFWGERAPEAIKTAREAFVAHLLHAAGLADEPDYPEPLAD
Ga0308399_10035496F026171GGAGMSRSLRKLREAVKVARLADMPVAVALKALADMPEARAFQLEPETLRRMLLESLPEQYAVVLFEKAGYRVRLPLADLAYLARHDRTLTDLVTSVILWLDKE
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