NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308399_1020466

Scaffold Ga0308399_1020466


Overview

Basic Information
Taxon OID3300031509 Open in IMG/M
Scaffold IDGa0308399_1020466 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1682
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y

Sequences

Protein IDFamilyRBSSequence
Ga0308399_10204661F002978GAGMSVRDWRVTLKPWADRRLWFIQARCVGRVVWGVVYDADDPDSVALARRAIATLRAAGADCSALPHPLPGSPAPGA
Ga0308399_10204662F000642GAGGVQEISIALALCAVAAAVWYMRRRDVGAGRVTGWLLLYDAVGGWRVLPASYGDAGIVADGVTYPASLPALRAGRELIWIARCDAAALIEHQALERARESAALASLWKGGGQWIDFLRIVGVVLPAAFAYFTWAQVSALQGLVAQILALVGER
Ga0308399_10204663F001381GAGMQYVVATLYVLLWLALAAAAALWLPLWALPAALVQLAVAYVMVRAVWLTVARDD
Ga0308399_10204664F000855GAGGMDWIEDFWSKIVSWFDELSAGVHNGVIGWVNSLVEIWNGWMDALLHPAQAMPSVPALRWIVDWLGGIADYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
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