NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308399_1025110

Scaffold Ga0308399_1025110


Overview

Basic Information
Taxon OID3300031509 Open in IMG/M
Scaffold IDGa0308399_1025110 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1471
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029452Metagenome / Metatranscriptome188Y
F033055Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0308399_10251102F029452GGGGGMIYEYRCAECGWLTVASRTVEQRDVVPRCERCGKLTKRVFPPRAQIVIPRAFQLECAREAGKLVLPSTPEEKRYWDTFGIMDGDGE
Ga0308399_10251103F033055GAGGMWVYPNQVIVNDNWATNTGIDILLALGENDGLYIYNTSGVNSLHLGMPSEVVNCELRVRSDGLNPPLFLSFYLSGNTVSSITIYTTSNWETHTLTISRWDSVVLQADFGGTVAVDFLRAEPYGGSPTKRTLTGVGV
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