NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308010_1053997

Scaffold Ga0308010_1053997


Overview

Basic Information
Taxon OID3300031510 Open in IMG/M
Scaffold IDGa0308010_1053997 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #129
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1638
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F034715Metagenome / Metatranscriptome174Y
F069051Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0308010_10539972F069051N/AMKHDIDLFCEPDLNYEFRYPVKLLNIVFQGGTFGNFLKFFVEKFSTKTPDMIGDPFTEIGTSHQVNDSNFSGLIERYHQRFINDNEGNSDLPVCLVIPSNKKHFLYLKKAQWFRAGDSKISPDDLWQKAIGEMPEMIAKQAHDIIKLYDIKETAHFTWIPKFIVRDWYKLEFLQDLEDTYNYQWFDTFKKHPFFEGQKVFHLDLETFFDLETFIENITELNDVFDLALDFDRLTEMKEIFNKGLSLDVIRQECNMVEDVLANRSDAQLNDLDVATEAFIYAEMEKDNTDIQAPLTNRFFRDATEISQFIEHYPNWYRRPNPNIKK
Ga0308010_10539973F000302N/AMALDTKEKIRDLEGQKILLEDRLEHLGYASNLVKMHETESEIFEIEDTIKKLIG
Ga0308010_10539974F034715N/ANDTHCSRCGEKHGATHHEEEMTGWEDEDIEAEVEEIF
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