NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308010_1251670

Scaffold Ga0308010_1251670


Overview

Basic Information
Taxon OID3300031510 Open in IMG/M
Scaffold IDGa0308010_1251670 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #129
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)621
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008341Metagenome / Metatranscriptome335Y
F015662Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0308010_12516702F008341AGGMSETLRKIVVETMIPANFNFMARDLDGSVHAFVNEPNLDYGTNKNPLPCDMWDDPSGGDTMPVSFKTSKDAGDLSEELGDWRDSCIEITGGN
Ga0308010_12516703F015662N/ARFNMGTMKKQLIKELIEDEIAQIDFVEISSEESARVELKADMARLRERNRIQMEMYDDPYMNWSGHR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.