NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308010_1277105

Scaffold Ga0308010_1277105


Overview

Basic Information
Taxon OID3300031510 Open in IMG/M
Scaffold IDGa0308010_1277105 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #129
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)582
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033221Metagenome / Metatranscriptome178Y
F076505Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0308010_12771051F076505N/AHIWMGLIAILSSFVMSLLGVILMIHLDFWLGVLLTITGMVCLLRALPRISEDI
Ga0308010_12771052F033221GAGMIPYNVLQQVEECKDKHSNYELIQYDLFFPEQSILDERDKEAKRIQRSFVTSIKQSLLKIITN

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