NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308397_1006446

Scaffold Ga0308397_1006446


Overview

Basic Information
Taxon OID3300031512 Open in IMG/M
Scaffold IDGa0308397_1006446 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4436
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F031016Metagenome / Metatranscriptome183Y
F051735Metagenome / Metatranscriptome143N
F087842Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308397_10064461F031016N/ADEFVKYEEFEGETLGACWEEENSRGTQTTFYRTPDGRIVVHVVRWSRWENEATYAYVHVFPSLEGVNGAAAMFWRELRKAGIIPPLTVGLDE
Ga0308397_10064462F002982GGAGGVKIQFERHPHAICAVLTEQSACDRIITVARASDAIDALALDIHTAALKPLDALFSLPRVVCVEIEQRSGGWCVEVAYWHKGLGTLAQYETDAATLSEALARCVWALAR
Ga0308397_10064463F087842AGGAGGMITIWGGYIAAGDARVYLVIFDGERIGGVEDGRNAQRTFYRVHDGRVVVHEVRIGKRRYGRTYDQALVYVFSSITEACAHLDVHPQHIAQTRGEATLPRVDAPTLTLDEWASGVGSY
Ga0308397_10064466F007976AGGAGMPSLDITNFLNVAINIQATPFPGIHVADGVILATDGVMLVAKKFDDKVFLRGEGAISPKAAKVLEALAEATWIGSIAVVGNRVTATARSTRYEENVGEVAGEYCEVKLPEFYCPRAPVARMLGVLTDESRGWQQIVENPRLKNINEWSVKEFVVLMSNLREGYELFRLKDIDDEHWYSVAQLRRGLRLFGAKAHLSVRRNRDGWLCFEDRWGQTFAITPFVKRD
Ga0308397_10064468F006418AGGAGMPKKRRSAPKPQPAREVVIEEGADYRILYDRETRDYAVEFKGAPVGWRASESEARRLIEALRYEDARRGE
Ga0308397_10064469F051735AGAAGGMLRDVTIISGPVPKDGVADYERLRVKARPLGRPYAWDNGRAWNPYTTNGGFLLVYECEDGTIYVQEIEWEVDPYPDATPDPRTYYYYERYTSLAEARAGWRGWLIEYALGTE
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