NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308397_1015806

Scaffold Ga0308397_1015806


Overview

Basic Information
Taxon OID3300031512 Open in IMG/M
Scaffold IDGa0308397_1015806 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2349
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042114Metagenome / Metatranscriptome158Y
F052993Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0308397_10158062F052993AGGMSRIHQFKAKAFQHVARKFNLRRYAFSYRDNQWLVAIRGNIVILSPTLIPVATDIVDIRRLGNEKDYELFLALTGIGVRQSLRYQLVATGNFVTLYAKYNHAIFARSNQHVYSTRWRRIALAHAKHVSRRIKQPPCMQIAEDVERGKLMIALNYARLGSFYIFVNGIPIDYAYPFHEQCSPQVYFGERKMLMKDNVVPWLNRLERTQLLPLPTPPPTLEQVLDKSTDLDYHDGHGQEEDYPGTD
Ga0308397_10158064F042114N/AMDAITRVETLNEAFKAVQLRVPLLYQHVSWRALYQPIDSQRARLIISNPHRYPQPNEYADATADMAIFVAHAQPRRFECNGWKCLQFELERKTLQ
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