NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308397_1019690

Scaffold Ga0308397_1019690


Overview

Basic Information
Taxon OID3300031512 Open in IMG/M
Scaffold IDGa0308397_1019690 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2007
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F002978Metagenome / Metatranscriptome516Y
F011940Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0308397_10196901F011940N/ALAPLTPPPAAGDDVSWDGSLVGDLLDGLEALGRAVAPPASRICDLPVPVLADAPEYGFRDALPDFVAGLCGFFGVASPVLGFVRLPVTLMVVGFVFWTGWRVFRSLS
Ga0308397_10196904F000642GGAGMQEMSVALALCAVGAAVWYMRRRDAGAGRVTGWLLLYDDVGGWRVLPASYGDAGVVADGVTYPASLPALRVGRELVWIARCDAAALIEHRALERARESAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVASLQSLVAQILALVGER
Ga0308397_10196905F002978GAGGVSVCDWRVTLKPWADRRLWFIQARCGRRVVWGVVYDAADPESVALARRAIATLRAAGADCSALPAVLPGAPPGAPGA
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