NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308397_1028250

Scaffold Ga0308397_1028250


Overview

Basic Information
Taxon OID3300031512 Open in IMG/M
Scaffold IDGa0308397_1028250 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1548
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F015735Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0308397_10282501F015735GAGGMVVYHHWSVEWHSRDVDPPGGLPRVVCIARRAVSDPFAGPGPFPPDIDRAVRAWNLVASGGARDYGAGYEVAWRVAVVADDAGGDAPPDGAWSDDPVYRARRRLLRWIMRSQCPIPALADHFAAEHFRD
Ga0308397_10282502F002372AGGGGGMPTRREDALWSVVHRRSSHLRALLDSLDLVDIGVTYELDFYPYAIVDLLRVRDDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0308397_10282503F002795AGGAGGMVASGLVLRGMVASYREFTSRKDGKTYRVVTVYGDLVAGEDVLCSVDGYDVFVDSPDYARGEVVEFPARLQFVRDGSGRPVIKLYVDEGVR
Ga0308397_10282504F002229GAGGMVTLLTMDGVEDVDYTPSDAEIRVALDDRALYGMVLNGVTWMRLVSGAGWWTVVCDRRVTATLAAVGWCWVADGCGARGYWSPALACVPAEVRALCGGYVEDEDEEAGNGG
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