NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308397_1064488

Scaffold Ga0308397_1064488


Overview

Basic Information
Taxon OID3300031512 Open in IMG/M
Scaffold IDGa0308397_1064488 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)852
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F063723Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0308397_10644881F063723N/AGARRVATLDDLAALRGAVLVWDEVQVSLDSREWASEAARCLTRDMILWGKRGVICVYTSPSFATVDVRLRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDSWYGVYDTLYGAAPGDTLAILPAPAPAPAPAIARRRG
Ga0308397_10644882F002229GGAGGMVTLLTLDGVEDVDYVPSDLEVRASLDDSGLYGMVLGGVTWMRLVPGVGWWTVIGGRRVTATLAAVGWCWVADGCGARGYWSPALACVPAEVRSMCGGCVEDEDEE
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