NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1000785

Scaffold Ga0308412_1000785


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1000785 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16817
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (85.71%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F005028Metagenome / Metatranscriptome414Y
F005631Metagenome / Metatranscriptome394N
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F018115Metagenome / Metatranscriptome236Y
F025895Metagenome / Metatranscriptome199Y
F044842Metagenome / Metatranscriptome153Y
F051735Metagenome / Metatranscriptome143N
F076715Metagenome / Metatranscriptome117N
F087842Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308412_100078510F051735AGGAGGMFRDVTIINGPVPRDGVADYERLRIKARPLGRPYAWDNGRAWNDYTTNGGVAIVFEAKDGSIYIQEIEWEVDPYPDATPDPRTYYYYEVYNSLAEARAGWRGWLIEYALGNE
Ga0308412_100078511F006418AGGAGMPKRRSASKPRPAREVVIEEGEDYKIIFDRETKDYAVEYRGEPVGWRASESEARRLVEQLRYEDARRGE
Ga0308412_100078514F007976AGGAMPSTELSNFLRVALEIQATPFAGVHVDDGVILATDGVMLVTKKFDDKVFLRGRGSISPKAARVLETLAAETWIGSIEVSGNRVSVTAQGTWFDEKIGAEVAGAYREVTLPEFYCPRAPVARMLGVLTDESRGWQQIVENPNLKALKEMSARDYVALIDNPRNGGELFRPKEIDDPHWYSVAQLRRGLRLFGARARLSVRRNDKGWLAFEDGYGHTFAVTPFVKHD
Ga0308412_100078516F087842AGGAGGMITIWGGYVAVGDARVYLIVFDGERIGGVDERNAQKTFYSTADGRVVVHEVRSGRRRGGRTYDQALVYVFSSITEACAHLDVHPQHIAQTRGDAALPDVDAPTLTPDEWASGVGSY
Ga0308412_100078517F002982AGGAGVKLQFERTPTAICAVLTDTGECDRIINVARASDAIDAFALDIHTAALKPLDALFSLPRVVYVEIERRNGGWCVEVAYWNKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0308412_100078522F044842AGGAGGVEEIELWCGVRGNTFQSTHLVRFIGEYLGMVTVAHADEWVERCVLYRTEDGRVALHQMRLSLLDDGIDIAEVYVLPALGAGEGVREQR
Ga0308412_100078524F025895GGTGGMSDVIAWIIAGGVIFALVNSNAADGLLSALDLSDNLKRAVDWARGVRGVPAGVAAVCFFILAYVFGALAYRYDLVPTWRFIQPIANDVLSTGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDFGEAVALVEVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLAVLCAVTALLLAANVRAPGGGGGGR
Ga0308412_100078525F076715AGGAMWWKIEPIPHQELEDWERALLRCENRAKRDPATRAAGVFVVFVREGETRPEYAPGDKVPEGAYPVGKWTLKKKGWMWYE
Ga0308412_100078526F005028GGTGGMRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRSDALAVAELMLTVGYRPTFIRYFLRYHVPTLRESAAVGETYTDPDAATEAHLGLCWRLDEDVLTVYTDLHSAAKRLRQPYRDLAAVCLKWGYVHETVVQMLAKALERKV
Ga0308412_100078527F018115AGGAGMSDEAERFVRWYAHLQPDAPLDRHAARALLRRALADREALAEFLLEQCTPALLGEFINRHWNAALSDALDSASLRLALRVMHAVWRIEDDRDRRAVLVCFRRGIIPNTKIMRRLCVVVRN
Ga0308412_10007855F005631GGAGMQVSVSVDLDNALRKLLPRSARIEAALDAGAAAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHRGRWASLRDAAEAAKKEAIAVLKGR
Ga0308412_10007858F016404N/AMTIDELLTDEARAAVLRALLMIVLNESDPAGARVAAARLFLSQFDEQPNADQSVLVIVDEAAFVKTV
Ga0308412_10007859F010840AGGAGGVNLPFSQPLDKITFGALAAATVIILAWALREFAGIELPAEVQSALAVIFGYVVSYHIPLSEVEAEAIARKYYRNYK
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