NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1002448

Scaffold Ga0308412_1002448


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1002448 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9996
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F006252Metagenome / Metatranscriptome377Y
F007404Metagenome / Metatranscriptome351Y
F008499Metagenome / Metatranscriptome332Y
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y
F019420Metagenome / Metatranscriptome229Y
F072382Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10024481F008499N/AMKSRSEPRWKRKERDALRALQATFGRVGDPSLSRLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARKRMLTKPTLDALLQTIDRAARYERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERADE
Ga0308412_100244810F014738GGAGGMKLDILLLVSAFALAFVHPDAAQVAATAVLVLLTVRIERGRRARKKRSAPVVH
Ga0308412_100244811F007404AGGAGMDIIEIFQLLAAGHAGLTATDYLWNAVFGAIGAATAYLADKEGVVLLPRYDAEQHSVELGALGRVLVGAGAGTLVGYSGYVPFIAGVVAPTLLPLLIDKITVFVERRRK
Ga0308412_10024482F004307AGGAMFKELIGNPGNGRERPELNGAYIGRFLGVKERQRPTFETRLSPEPTYEDVFVFEFEVVDPELDAPLRVSRWVRKPPRLDHPAKNGKVSNLYKTLAALYGVSVMSDEQLQNAEEFVQNAVGREYQLTLETKPSGWVEIVHIAPVRARLRKTKEDEVPF
Ga0308412_10024485F006252GAGMKSFDEQAAFGLPYERVIAQTAALLLYPHRLDLTLVRLDAYAALDYLLFDEGQPVAALEVKRRSVRSDAYPTTIIPQSVVDAAKRLTIPVYAAILFLDGLAVFDVLRTPSSVRWLRTRRGVLRKHREYDISERMVRIEEVHQPPRRSA
Ga0308412_10024486F019420AGGGGGMATYRDVTFWSGATDGDREAAVIRARLLGMVIELGDDDERPDKMTAFYEADGGGIIVYEVECWEADGRMTARRRRVASLEEVRHNRAYAAYLERLEL
Ga0308412_10024488F016100AGGAGGMVVSIKIERFKEYSELVRVVSRSEKTPATNKDIIRPLNYELFIGSHLPEPDWHRLGALVVSIFRSFAVVDVEIWQTNVGTWVADALVAFGDRRRLRKGEGDTPLHAVIELVYDIQRY
Ga0308412_10024489F072382AGGAGGMKTVYHTKDVWFPPFSIKIEPERGTWFADVYVRYAESPSLDTKYSAYIGADNFLAGTPIPAVDRRDVAKAIESLVFDYGLVGLVIYPTKEGWGASITLCPELENQYLHGTGETPADAIRNSNYPPPLRNV
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